Greetings Multani and all our fellow CPA-ers,
Really, I feel Scrye's the best all around, with alot more coverage for Magic than Top Deck (unless you're just buying it for the free booster...Magic related of course) It has alot more articles, columns and information on Magic and conventions then Top Deck, I'd say almost double the amount in Top deck.
Top Deck has alot of Pokemon stuff taking up the majority of it's pages, as it is the "official" publication of Wizards of the Coast, and their top selling CCG is Pokemon, so you really can't expect them to do otherwise...
Also, I find that most gaming stores use Scrye for their pricing of cards, using the low or median price on average, and adjusting their prices if they do at all.
And again, Scrye has ALL the cards from each set listed along with prices, so it helps you for both prices and for simply organizing your collection. (I'm still organizing, 'cuz I'd rather PLAY!!)
I still think Scrye beats out all others in all things. So that's my 2(hundred) cents...